PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_199270_qtpw.t1
Common NameSOVF_199270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 389aa    MW: 40797.3 Da    PI: 6.5094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_199270_qtpw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62.1e-1581132155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sp_199270_qtpw.t1  81 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 132
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003671.4E-56677IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1881142IPR016177DNA-binding domain
CDDcd000186.08E-2681142No hitNo description
PfamPF008474.5E-1081132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1882141IPR001471AP2/ERF domain
SMARTSM003801.8E-3382146IPR001471AP2/ERF domain
PROSITE profilePS5103219.21682140IPR001471AP2/ERF domain
PRINTSPR003671.4E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGSSGQQQPP LTTVNNGETS GDNNNSSSTD GGAALSAAVV TTAITPVVEA TPRRSLDTFG  60
QRTSIYRGVT RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA  120
EAYDIAAIKF RGLNAVTNFD MSRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM  180
LALSNSTYPY GAASSSGSTR YGAHPNTYPL LPYHHQQDTQ PQPLLTLHNN LGSQESYTHQ  240
EAQFLQLYQQ SSYSNPSSMY HSYQLQTNPN LLHGFMGMGS DSSGCVIDGT NNNNGSSSGG  300
SYSGGGGGCG GGGGYLGSGV GINGMGSASS TSNVVGPDET DHQPLAMVKV DYDMHPSGGG  360
GGGDGGSYAG WSTETVQGPN NGVFAMWND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673600.11e-149PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP73e-91PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0K9QD640.0A0A0K9QD64_SPIOL; Uncharacterized protein
STRINGPOPTR_0003s20470.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-71AP2 family protein